XMAS/ChimeraX
XMAS/ChimeraX allows for easily working with crosslinking mass spectrometry data in a structural context.
On this page you will find tutorials on how to work with XMAS. All required data can be downloaded from our BioRxiv submission (supplementary material).
Taking your baby steps with installing and mapping your first crosslinks to the initial analysis steps.
Learn how to use XMAS to plug structures and crosslinks into the protein-protein docking platform HADDOCK. XMAS assists by allowing you to extract the best possible set of crosslinks through DisVis prior to initiating the docking step.
This video demonstrates loading massive datasets into ChimeraX with the help of XMAS.